Alternatives to PLINK 2.0
A command-line toolset for whole-genome association analysis and genetic data management. Notes say what changes if you switch.
The original
PLINK 2.0
A command-line toolset for whole-genome association analysis and genetic data management.
4 alternatives
Most similar to PLINK 2.0 first.
PLINK 1.9
A command-line toolset for whole-genome association analysis and large-scale genetic data processing.
PLINK 1.9 also handles genome-wide association analysis and genetic data processing, with Windows, macOS, Linux and command-line builds.
MrBayes
A command-line program for Bayesian inference of phylogenetic trees and evolutionary models.
Clustal Omega
A command-line tool for multiple sequence alignment of DNA, RNA and protein sequences.
BEAST 2
A cross-platform program for Bayesian phylogenetic analysis of molecular sequences using MCMC sampling.
